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Suriya Rutatip. Phylogenetic analysis of 16S rDNA sequences of Pediococcus acidilactici TISTR 2309: relationships between closely related species. (). King Mongkut's University of Technology North Bangkok. Central Library. : , 2106.
Phylogenetic analysis of 16S rDNA sequences of Pediococcus acidilactici TISTR 2309: relationships between closely related species
Organization :
King Mongkut's University of Technology North Bangkok
Name: Savitri Vatanyoopaisarn
Organization :
King Mongkut's University of Technology North Bangkok
Email :
savitri.v@kmutnb.ac.th
Name: Suriya Rutatip
Organization :
King Mongkut's University of Technology North Bangkok
keyword:
Cladogram
LCSH:
LACTIC ACID BACTERIA
LCSH:
PEDIOCOCCUS ACIDILACTICI
LCSH:
BACTERIOCINS
LCSH:
PHYLOGENY
Abstract:
Phylogeny is the study of relationships and evolution between collections of things (genes, proteins, organisms or etc.) that are derived from a common ancestor. It is a useful tool for classifying organisms and gives better results than traditional identification methods based on morphological, metabolic and other phenotypic traits. Pediococcus acidilactici TISTR 2309 is one of the lactic acid bacteria (LAB) that was found in traditional Thai fermented sausages and it has the potential to produce bacteriocin against foodborne Gram positive bacteria, includingBacillus cereus and Staphylococcus aureus. Three phylogenetic trees derived from the Maximum Likelihood, Neighbor-Joining and Maximum Pasimony methods, were compared in order to find the relationship of the strains constructed by each method. The results from phylogenetic analysis of 16S rDNA sequences by these 3 methods indicated that P. acidilacticiTISTR 2309 is homogenous to P. acidilacticiIMAU60189. However when the same sequence of TISTR 2309 was used as input for search tools of NCBI Blast and ENA, the two databases provided different results of identification and different suggested strains. It was also found that the potential in bacteriocin production of the P. acidilactici TISTR 2309 isolate did not reduce over nine years of laboratory subculture.
King Mongkut's University of Technology North Bangkok. Central Library
Address:
Bangkok
Email:
library@kmutnb.ac.th
Created:
2106
Modified:
2559-06-14
Issued:
2016-06-14
บทความ/Article
application/pdf
BibliograpyCitation :
INTERNATIONAL JOURNAL OF APPLIED SCIENCE AND TECHNOLOGY. vol. 9, no. 2 (Apr.-June 2016), p. 137-144
eng
ใช้เวลา
0.027512 วินาที
Kittipon Chantawongsatorn
| Title | Contributor | Type |
|---|---|---|
| Phylogenetic analysis of 16S rDNA sequences of Pediococcus acidilactici TISTR 2309: relationships between closely related species
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| Phylogenetic analysis of 16S rDNA sequences of Pediococcus acidilactici TISTR 2309: relationships between closely related species
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| Title | Contributor | Type |
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| Phylogenetic analysis of 16S rDNA sequences of Pediococcus acidilactici TISTR 2309: relationships between closely related species
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